Index _ | A | B | C | D | E | F | G | I | L | M | O | P | R | S | T | U | V _ __init__() (fusor.fusor.FUSOR method) A AbstractFusion (class in fusor.models) AdditionalFields (class in fusor.models) ANCHORED_READS (fusor.models.FUSORTypes attribute) AnchoredReads (class in fusor.models) anchoredReads (fusor.models.TranscriptSegmentElement attribute) Assay (class in fusor.models) assay (fusor.models.AssayedFusion attribute) ASSAYED_FUSION (fusor.models.FusionType attribute) (fusor.models.FUSORTypes attribute) assayed_fusion() (fusor.fusor.FUSOR static method) AssayedFusion (class in fusor.models) assayId (fusor.models.Assay attribute) assayName (fusor.models.Assay attribute) associatedGene (fusor.models.FunctionalDomain attribute) (fusor.models.RegulatoryElement attribute) ATTENUATOR (fusor.models.RegulatoryClass attribute) B BaseModelForbidExtra (class in fusor.models) BaseStructuralElement (class in fusor.models) BREAKPOINT_COVERAGE (fusor.models.FUSORTypes attribute) BreakpointCoverage (class in fusor.models) C CAAT_SIGNAL (fusor.models.RegulatoryClass attribute) CATEGORICAL_FUSION (fusor.models.FusionType attribute) (fusor.models.FUSORTypes attribute) categorical_fusion() (fusor.fusor.FUSOR static method) CategoricalFusion (class in fusor.models) CAUSATIVE_EVENT (fusor.models.FUSORTypes attribute) CausativeEvent (class in fusor.models) causativeEvent (fusor.models.AssayedFusion attribute) check_data_resources() (in module fusor.tools) check_exons() (fusor.models.TranscriptSegmentElement class method) civicMolecularProfiles (fusor.models.CategoricalFusion attribute) contig (fusor.models.AssayedFusion attribute) (fusor.models.ContigSequence attribute) CONTIG_SEQUENCE (fusor.models.FUSORTypes attribute) ContigSequence (class in fusor.models) cool_seq_tool (fusor.tools.FusorDataResourceStatus attribute) coverage (fusor.models.TranscriptSegmentElement attribute) criticalFunctionalDomains (fusor.models.CategoricalFusion attribute) D DomainStatus (class in fusor.models) E elementGenomicEnd (fusor.models.TranscriptSegmentElement attribute) elementGenomicStart (fusor.models.TranscriptSegmentElement attribute) enforce_abc() (fusor.models.AbstractFusion class method) enforce_element_quantities() (fusor.models.AbstractFusion class method) ENHANCER (fusor.models.RegulatoryClass attribute) ENHANCER_BLOCKING_ELEMENT (fusor.models.RegulatoryClass attribute) ensure_min_values() (fusor.models.RegulatoryElement class method) eventDescription (fusor.models.CausativeEvent attribute) EventType (class in fusor.models) eventType (fusor.models.CausativeEvent attribute) Evidence (class in fusor.models) exonEnd (fusor.models.TranscriptSegmentElement attribute) exonEndOffset (fusor.models.TranscriptSegmentElement attribute) exonStart (fusor.models.TranscriptSegmentElement attribute) exonStartOffset (fusor.models.TranscriptSegmentElement attribute) F featureId (fusor.models.RegulatoryElement attribute) featureLocation (fusor.models.RegulatoryElement attribute) fragmentCoverage (fusor.models.BreakpointCoverage attribute) FUNCTIONAL_DOMAIN (fusor.models.FUSORTypes attribute) functional_domain() (fusor.fusor.FUSOR method) FunctionalDomain (class in fusor.models) fusion() (fusor.fusor.FUSOR method) fusionDetection (fusor.models.Assay attribute) FusionType (class in fusor.models) FUSOR (class in fusor.fusor) fusor.exceptions module fusor.fusor module fusor.models module fusor.nomenclature module fusor.tools module FusorDataResourceStatus (class in fusor.tools) FUSORParametersException FUSORTypes (class in fusor.models) G GC_SIGNAL (fusor.models.RegulatoryClass attribute) gene (fusor.models.GeneElement attribute) (fusor.models.TranscriptSegmentElement attribute) GENE_ELEMENT (fusor.models.FUSORTypes attribute) (fusor.models.StructuralElementType attribute) gene_element() (fusor.fusor.FUSOR method) gene_nomenclature() (in module fusor.nomenclature) gene_normalizer (fusor.tools.FusorDataResourceStatus attribute) GeneElement (class in fusor.models) generate_nomenclature() (fusor.fusor.FUSOR method) (in module fusor.nomenclature) get_error_message() (in module fusor.tools) I id (fusor.models.FunctionalDomain attribute) IDTranslationException IMPRINTING_CONTROL_REGION (fusor.models.RegulatoryClass attribute) INFERRED (fusor.models.Evidence attribute) INSULATOR (fusor.models.RegulatoryClass attribute) L label (fusor.models.FunctionalDomain attribute) linker_element() (fusor.fusor.FUSOR static method) LINKER_SEQUENCE_ELEMENT (fusor.models.FUSORTypes attribute) (fusor.models.StructuralElementType attribute) LinkerElement (class in fusor.models) linkerSequence (fusor.models.LinkerElement attribute) LOCATION_ID (fusor.models.AdditionalFields attribute) LOCUS_CONTROL_REGION (fusor.models.RegulatoryClass attribute) LOST (fusor.models.DomainStatus attribute) M methodUri (fusor.models.Assay attribute) MINUS_10_SIGNAL (fusor.models.RegulatoryClass attribute) MINUS_35_SIGNAL (fusor.models.RegulatoryClass attribute) module fusor.exceptions fusor.fusor fusor.models fusor.nomenclature fusor.tools MULTIPLE_POSSIBLE_GENES_ELEMENT (fusor.models.FUSORTypes attribute) (fusor.models.StructuralElementType attribute) multiple_possible_genes_element() (fusor.fusor.FUSOR static method) MultiplePossibleGenesElement (class in fusor.models) O OBSERVED (fusor.models.Evidence attribute) OTHER (fusor.models.RegulatoryClass attribute) P POLYA_SIGNAL_SEQUENCE (fusor.models.RegulatoryClass attribute) PRESERVED (fusor.models.DomainStatus attribute) PROMOTER (fusor.models.RegulatoryClass attribute) R READ_DATA (fusor.models.FUSORTypes attribute) READ_THROUGH (fusor.models.EventType attribute) ReadData (class in fusor.models) readData (fusor.models.AssayedFusion attribute) readingFramePreserved (fusor.models.AbstractFusion attribute) reads (fusor.models.AnchoredReads attribute) REARRANGEMENT (fusor.models.EventType attribute) reg_element_nomenclature() (in module fusor.nomenclature) region (fusor.models.TemplatedSequenceElement attribute) REGULATORY_ELEMENT (fusor.models.FUSORTypes attribute) regulatory_element() (fusor.fusor.FUSOR method) RegulatoryClass (class in fusor.models) regulatoryClass (fusor.models.RegulatoryElement attribute) RegulatoryElement (class in fusor.models) regulatoryElement (fusor.models.AbstractFusion attribute) RESPONSE_ELEMENT (fusor.models.RegulatoryClass attribute) RIBOSOME_BINDING_SITE (fusor.models.RegulatoryClass attribute) RIBOSWITCH (fusor.models.RegulatoryClass attribute) S SEQUENCE_ID (fusor.models.AdditionalFields attribute) sequenceLocation (fusor.models.FunctionalDomain attribute) SILENCER (fusor.models.RegulatoryClass attribute) spanning (fusor.models.ReadData attribute) SPANNING_READS (fusor.models.FUSORTypes attribute) SpanningReads (class in fusor.models) spanningReads (fusor.models.SpanningReads attribute) split (fusor.models.ReadData attribute) SPLIT_READS (fusor.models.FUSORTypes attribute) SplitReads (class in fusor.models) splitReads (fusor.models.SplitReads attribute) status (fusor.models.FunctionalDomain attribute) strand (fusor.models.TemplatedSequenceElement attribute) StructuralElementType (class in fusor.models) structure (fusor.models.AbstractFusion attribute) (fusor.models.AssayedFusion attribute) (fusor.models.CategoricalFusion attribute) structure_ends() (fusor.models.AbstractFusion class method) T TATA_BOX (fusor.models.RegulatoryClass attribute) templated_seq_nomenclature() (in module fusor.nomenclature) TEMPLATED_SEQUENCE_ELEMENT (fusor.models.FUSORTypes attribute) (fusor.models.StructuralElementType attribute) templated_sequence_element() (fusor.fusor.FUSOR method) TemplatedSequenceElement (class in fusor.models) TERMINATOR (fusor.models.RegulatoryClass attribute) TRANS_SPLICING (fusor.models.EventType attribute) transcript (fusor.models.TranscriptSegmentElement attribute) TRANSCRIPT_SEGMENT_ELEMENT (fusor.models.FUSORTypes attribute) (fusor.models.StructuralElementType attribute) transcript_segment_element() (fusor.fusor.FUSOR method) TranscriptSegmentElement (class in fusor.models) translate_identifier() (in module fusor.tools) tx_segment_nomenclature() (in module fusor.nomenclature) type (fusor.models.AbstractFusion attribute) (fusor.models.AnchoredReads attribute) (fusor.models.Assay attribute) (fusor.models.AssayedFusion attribute) (fusor.models.BaseStructuralElement attribute) (fusor.models.BreakpointCoverage attribute) (fusor.models.CategoricalFusion attribute) (fusor.models.CausativeEvent attribute) (fusor.models.ContigSequence attribute) (fusor.models.FunctionalDomain attribute) (fusor.models.GeneElement attribute) (fusor.models.LinkerElement attribute) (fusor.models.MultiplePossibleGenesElement attribute) (fusor.models.ReadData attribute) (fusor.models.RegulatoryElement attribute) (fusor.models.SpanningReads attribute) (fusor.models.SplitReads attribute) (fusor.models.TemplatedSequenceElement attribute) (fusor.models.TranscriptSegmentElement attribute) (fusor.models.UnknownGeneElement attribute) U UNKNOWN_GENE_ELEMENT (fusor.models.FUSORTypes attribute) (fusor.models.StructuralElementType attribute) unknown_gene_element() (fusor.fusor.FUSOR static method) UnknownGeneElement (class in fusor.models) V values() (fusor.models.FusionType class method)